I have a small issue with my capitol ship, whenever i warp to a new zone, I load in facing the exact opposite direction of the planet i'm heading towards! After some experimentation I've noticed that putting thrusters on the back side of my ship, has the statistics page (from pressing P while in the cockpit and going to statistics) saying I'm getting extra thrust going backwards, same thing happens if i put extra thrusters pointing to the left...the statistics says they're pointing...
Capitol Ship flying backwards
Capitol Ship flying backwards